C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371144 STAG2-008 ENSG00000101972 9606 + X:123961739-124100902 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryENST00000371144
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000371144 5.696±0.00 3.235±0.00 3.664±0.34 4.411±0.58 1.617±0.53 4.885±0.00 5.627±0.00 10.683±0.00 3.149±0.00 6.881±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GB CIL_0000GB_0002 CGP X:123859724-124422664
CIL_0007YQ CIL_0007YQ_0001 VISTA X:123916977-124518737
CIL_0000AX CIL_0000AX_0001 CGP X:123960212-124422664

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000775 TAS chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 TAS chromosome
GO:0005730 IDA nucleolus
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0007062 IMP sister chromatid cohesion
GO:0007067 IEA mitotic nuclear division
GO:0015629 IDA actin cytoskeleton
GO:0016020 IDA membrane
GO:0032876 IMP negative regulation of DNA endoreduplication
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051321 IEA meiotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115072 Stag2-201 protein_coding Mus_musculus 0 6119
ENSMUST00000069619 Stag2-001 protein_coding Mus_musculus 0 6119
ENSMUST00000115073 Stag2-002 protein_coding Mus_musculus 0 5312
ENSMUST00000128799 Stag2-005 protein_coding Mus_musculus 0 741
ENSMUST00000141414 Stag2-004 processed_transcript Mus_musculus 0 544
ENSMUST00000136323 Stag2-003 retained_intron Mus_musculus 0 544
ENSMUST00000123245 Stag2-007 protein_coding Mus_musculus 0 289
ENSMUST00000127618 Stag2-006 protein_coding Mus_musculus 0 283

Loading