C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: period circadian clock 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254657 PER2-001 ENSG00000132326 9606 - 2:238244038-238288609 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254657
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254657 2.109±0.00 3.343±0.00 0.506±0.00 1.244±0.18 4.759±2.59 1.847±0.00 2.197±0.00 2.077±0.26 1.210±0.00 4.994±0.00 2.618±1.56 3.279±1.66 1.144±0.04 5.746±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KS CIL_0004KS_0002 CGP 2:238238267-238290102
CIL_0003NE CIL_0003NE_0001 CGP 2:238244038-238400900

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000976 ISS transcription regulatory region sequence-specific DNA binding
GO:0000989 ISS transcription factor binding transcription factor activity
GO:0001047 IEA core promoter binding
GO:0001222 IEA transcription corepressor binding
GO:0002931 ISS response to ischemia
GO:0003713 ISS transcription coactivator activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005978 ISS glycogen biosynthetic process
GO:0006094 ISS gluconeogenesis
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006631 ISS fatty acid metabolic process
GO:0007165 IEA signal transduction
GO:0007623 TAS circadian rhythm
GO:0008134 IEA transcription factor binding
GO:0019229 ISS regulation of vasoconstriction
GO:0019249 ISS lactate biosynthetic process
GO:0019900 IEA kinase binding
GO:0031397 ISS negative regulation of protein ubiquitination
GO:0032922 ISS circadian regulation of gene expression
GO:0035257 IEA nuclear hormone receptor binding
GO:0036002 IEA pre-mRNA binding
GO:0042752 ISS regulation of circadian rhythm
GO:0042754 ISS negative regulation of circadian rhythm
GO:0042826 IEA histone deacetylase binding
GO:0043130 ISS ubiquitin binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048471 IEA perinuclear region of cytoplasm
GO:0050767 ISS regulation of neurogenesis
GO:0050796 ISS regulation of insulin secretion
GO:0050872 ISS white fat cell differentiation
GO:0051726 ISS regulation of cell cycle
GO:0051946 ISS regulation of glutamate uptake involved in transmission of nerve impulse
GO:0060567 IEA negative regulation of DNA-templated transcription, termination
GO:0070063 IEA RNA polymerase binding
GO:0070345 ISS negative regulation of fat cell proliferation
GO:0070932 ISS histone H3 deacetylation
GO:0097167 ISS circadian regulation of translation
GO:1990226 IEA histone methyltransferase binding
GO:2000678 ISS negative regulation of transcription regulatory region DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069620 Per2-001 protein_coding Mus_musculus 0 2680
ENSMUST00000185298 Per2-002 processed_transcript Mus_musculus 0 215
ENSDART00000024304 per3-001 protein_coding Danio_rerio 9e-26 124
ENSMUST00000166748 Per1-201 protein_coding Mus_musculus 2e-16 94
ENSMUST00000102605 Per1-002 protein_coding Mus_musculus 2e-16 94
ENSMUST00000021271 Per1-001 protein_coding Mus_musculus 2e-16 94
ENSMUST00000101004 Per1-003 protein_coding Mus_musculus 2e-16 94
ENSDART00000098004 per2-202 protein_coding Danio_rerio 0.0000000000005 82
ENSDART00000039735 per2-201 protein_coding Danio_rerio 0.0000000000005 82
ENSDART00000148788 per2-001 protein_coding Danio_rerio 0.0000000000005 82
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000007 62

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