C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ngfi-A binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069792 Nab1-001 ENSMUSG00000002881 10090 - 1:52457294-52500679 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069792
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069792 7.816±1.36 3.599±0.36 8.630±0.46 1.701±0.34 3.922±2.02 10.970±1.39 3.459±0.32 4.810±1.01 6.766±1.99 4.786±0.89 1.555±0.27 7.633±1.32 6.524±3.22 1.527±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SM CIL_0002SM_0003 CGP 1:52163448-52500679
CIL_0002RZ CIL_0002RZ_0002 CGP 1:52457294-52651919

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001958 IGI endochondral ossification
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IGI regulation of transcription, DNA-templated
GO:0008134 IDA transcription factor binding
GO:0014037 IGI Schwann cell differentiation
GO:0042552 IGI myelination
GO:0045682 IGI regulation of epidermis development
GO:0045892 IEA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337386 NAB1-001 protein_coding Homo_sapiens 0 2013
ENST00000409581 NAB1-003 protein_coding Homo_sapiens 0 2006
ENST00000409641 NAB1-010 protein_coding Homo_sapiens 0 1999
ENST00000416973 NAB1-005 protein_coding Homo_sapiens 0 645
ENST00000423076 NAB1-009 protein_coding Homo_sapiens 0 438
ENST00000423376 NAB1-008 protein_coding Homo_sapiens 0 285
ENST00000426601 NAB1-004 protein_coding Homo_sapiens 0 457
ENST00000434473 NAB1-002 protein_coding Homo_sapiens 0 682
ENST00000448811 NAB1-006 protein_coding Homo_sapiens 0 636
ENST00000458074 AF013593.1-001 processed_pseudogene Homo_sapiens 0 828

Loading