C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rap1 interacting factor 1 homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069794 Rif1-001 ENSMUSG00000036202 10090 + 2:52072842-52122383 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000069794
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000069794 0.108±0.00 0.205±0.04 0.310±0.21 0.715±0.00 0.255±0.00 0.412±0.00 0.926±0.50 0.313±0.06 1.737±0.88 1.297±0.57 2.625±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S5 CIL_0003S5_0003 CGP 2:52038009-52122383
CIL_0003S6 CIL_0003S6_0003 CGP 2:52072837-52338798

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000781 IDA chromosome, telomeric region
GO:0001939 IDA female pronucleus
GO:0001940 IDA male pronucleus
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007049 IEA cell cycle
GO:0019827 IMP stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243326 RIF1-001 protein_coding Homo_sapiens 0 3773
ENST00000414861 RIF1-006 protein_coding Homo_sapiens 0 2551
ENST00000428287 RIF1-004 protein_coding Homo_sapiens 0 3783
ENST00000430328 RIF1-007 protein_coding Homo_sapiens 0 3773
ENST00000444746 RIF1-003 protein_coding Homo_sapiens 0 3773
ENST00000453091 RIF1-002 protein_coding Homo_sapiens 0 3773
ENST00000454583 RIF1-008 nonsense_mediated_decay Homo_sapiens 0 1057
ENST00000494333 RIF1-005 processed_transcript Homo_sapiens 0 673
ENST00000498041 RIF1-014 processed_transcript Homo_sapiens 0 309

Loading