C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069958 Gcnt2-202 ENSMUSG00000021360 10090 + 13:40886758-40960891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeKidneyLungMuscleOvaryENSMUST00000069958
Transcript ID Adipose Kidney Lung Muscle Ovary
ENSMUST00000069958 3.470±0.81 1.798±0.00 3.453±0.31 1.650±0.06 3.456±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097A CIL_00097A_0002 VISTA 13:40412299-41013499
CIL_00086X CIL_00086X_0002 VISTA 13:40425554-41028254
CIL_000382 CIL_000382_0002 CGP 13:40715675-40960891

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0007179 IMP transforming growth factor beta receptor signaling pathway
GO:0008109 IEA N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity
GO:0008284 IMP positive regulation of cell proliferation
GO:0008375 IDA acetylglucosaminyltransferase activity
GO:0010608 IMP posttranscriptional regulation of gene expression
GO:0010718 IMP positive regulation of epithelial to mesenchymal transition
GO:0010812 IEA negative regulation of cell-substrate adhesion
GO:0016021 IEA integral component of membrane
GO:0030335 IEA positive regulation of cell migration
GO:0034116 IEA positive regulation of heterotypic cell-cell adhesion
GO:0036438 IEA maintenance of lens transparency
GO:0051897 IMP positive regulation of protein kinase B signaling
GO:0070374 IMP positive regulation of ERK1 and ERK2 cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265012 GCNT2-004 protein_coding Homo_sapiens 0 656
ENST00000316170 GCNT2-001 protein_coding Homo_sapiens 0 1133
ENST00000459872 GCNT2-016 processed_transcript Homo_sapiens 0 540

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