C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: seven in absentia 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070368 Siah2-001 ENSMUSG00000036432 10090 - 3:58674938-58692400 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070368
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070368 4.808±1.43 18.066±3.91 4.910±0.35 4.270±1.45 9.045±2.01 9.537±0.86 4.285±0.20 9.826±0.48 8.799±3.25 7.136±0.48 3.108±0.84 14.329±6.41 4.175±1.34 53.601±23.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LA CIL_0003LA_0002 CGP 3:58616300-58692400

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 TAS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005769 IEA early endosome
GO:0005829 IEA cytosol
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007049 IEA cell cycle
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031396 IEA regulation of protein ubiquitination
GO:0031624 IEA ubiquitin conjugating enzyme binding
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body
GO:0043066 IEA negative regulation of apoptotic process
GO:0043154 IEA negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0044257 IEA cellular protein catabolic process
GO:0090090 IEA negative regulation of canonical Wnt signaling pathway
GO:2001237 IEA negative regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000065169 siah2l-001 protein_coding Danio_rerio 0 560
ENSDART00000113813 siah2l-201 protein_coding Danio_rerio 1e-21 110
ENST00000312960 SIAH2-001 protein_coding Homo_sapiens 0 1781
ENST00000356721 SIAH1-001 protein_coding Homo_sapiens 0 339
ENST00000380006 SIAH1-003 protein_coding Homo_sapiens 0 339
ENST00000394725 SIAH1-002 protein_coding Homo_sapiens 0 339
ENST00000472885 SIAH2-002 processed_transcript Homo_sapiens 0 198
ENST00000482706 SIAH2-003 protein_coding Homo_sapiens 0 529
ENST00000565185 LONP2-010 retained_intron Homo_sapiens 7e-38 161
ENST00000565867 LONP2-007 protein_coding Homo_sapiens 0 272
ENST00000566719 LONP2-009 retained_intron Homo_sapiens 0 339
ENST00000568007 SIAH1-004 nonsense_mediated_decay Homo_sapiens 0 339

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