C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070513 Spata6-006 ENSMUSG00000034401 10090 + 4:111720009-111768757 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryENSMUST00000070513
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000070513 8.757±0.48 15.426±4.84 8.648±2.04 5.404±2.27 6.186±1.69 0.466±0.20 8.753±2.88 11.488±4.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UZ CIL_0008UZ_0002 VISTA 4:111252851-111853446

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371843 SPATA6-002 protein_coding Homo_sapiens 0 374
ENST00000371847 SPATA6-001 protein_coding Homo_sapiens 0 544
ENST00000396199 SPATA6-201 protein_coding Homo_sapiens 0 654
ENST00000463938 SPATA6-003 processed_transcript Homo_sapiens 0 311
ENST00000471975 SPATA6-008 processed_transcript Homo_sapiens 0 531
ENST00000487543 SPATA6-007 nonsense_mediated_decay Homo_sapiens 0 424

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