C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071057 Ddx55-001 ENSMUSG00000029389 10090 + 5:124552864-124569660 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071057
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071057 2.448±0.83 1.907±0.79 3.073±0.84 4.761±1.32 2.736±0.86 3.197±0.38 0.954±0.14 2.017±0.72 2.504±1.61 2.527±0.47 1.116±0.29 2.977±0.90 3.398±1.17 1.089±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003J8 CIL_0003J8_0002 CGP 5:124540695-124569660
CIL_000395 CIL_000395_0002 CGP 5:124552864-124579131

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000238146 DDX55-001 protein_coding Homo_sapiens 0 1930
ENST00000354291 DDX55-012 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000538744 DDX55-004 protein_coding Homo_sapiens 0 1061
ENST00000539934 DDX55-002 retained_intron Homo_sapiens 0 874
ENST00000541259 DDX55-015 processed_transcript Homo_sapiens 0 318
ENST00000542286 DDX55-003 retained_intron Homo_sapiens 0 1251
ENST00000543016 DDX55-013 retained_intron Homo_sapiens 0 189
ENST00000544738 DDX55-009 nonsense_mediated_decay Homo_sapiens 0 942

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