C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000MF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000118946-ENSG00000139734 CGP 9606 13:57631810-60163987
GeneTranscriptPositionBiotype
ENSG00000118946 (PCDH17)
protocadherin 17 		ENST00000377918 (PCDH17-001) 57631812-57729311 protein_coding
ENST00000484979 (PCDH17-002) 57631810-57725540 nonsense_mediated_decay
ENST00000612954 (PCDH17-004) 57634383-57725293 protein_coding
ENST00000615375 (PCDH17-005) 57635013-57724748 protein_coding
ENSG00000214281 (HMGN2P39)
high mobility group nucleosomal binding domain 2 pseudogene 39 		ENST00000398005 (HMGN2P39-001) 59010332-59010604 processed_pseudogene
ENSG00000214335 (CTAGE16P)
CTAGE family, member 16, pseudogene 		ENST00000435601 (CTAGE16P-001) 58528615-58531026 processed_pseudogene
ENSG00000223815 (DIAPH3-AS2)
DIAPH3 antisense RNA 2 		ENST00000428656 (DIAPH3-AS2-001) 60144698-60153505 antisense
ENSG00000232954 (LINC00374)
long intergenic non-protein coding RNA 374 		ENST00000454780 (LINC00374-001) 58211697-58233117 lincRNA
ENSG00000265745 (RN7SL375P)
RNA, 7SL, cytoplasmic 375, pseudogene 		ENST00000492442 (RN7SL375P-201) 60034465-60034762 misc_RNA
ENSG00000277448 (RP11-538C21.2)
 ENST00000615202 (RP11-538C21.2-001) 58165827-58209483 lincRNA
ENSG00000278722 (RP11-95F22.1)
 ENST00000610846 (RP11-95F22.1-001) 57632759-57633575 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0000MF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035566-ENSMUSG00000022021 CGP 10090 14:84443563-87141224
GeneTranscriptPositionBiotype
ENSMUSG00000022021 (Diap3)
diaphanous homolog 3 (Drosophila) 		ENSMUST00000022599 (Diap3-201) 86655367-87141224 protein_coding
ENSMUST00000168889 (Diap3-202) 86656323-87141114 protein_coding
ENSMUSG00000035566 (Pcdh17)
protocadherin 17 		ENSMUST00000071370 (Pcdh17-201) 84443563-84537060 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MF_0001ENSG00000118946ENST00000377918ENST00000484979ENST00000612954ENST00000615375ENSG00000214281ENST00000398005ENSG00000214335ENST00000435601ENSG00000223815ENST00000428656ENSG00000232954ENST00000454780ENSG00000265745ENST00000492442ENSG00000277448ENST00000615202ENSG00000278722ENST00000610846CIL_0000MF_0002ENSMUSG00000022021ENSMUST00000022599ENSMUST00000168889ENSMUSG00000035566ENSMUST00000071370
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MF_0001ENSG00000118946ENST00000377918ENST00000484979ENST00000612954ENST00000615375ENSG00000214281ENST00000398005ENSG00000214335ENST00000435601ENSG00000223815ENST00000428656ENSG00000232954ENST00000454780ENSG00000265745ENST00000492442ENSG00000277448ENST00000615202ENSG00000278722ENST00000610846CIL_0000MF_0002ENSMUSG00000022021ENSMUST00000022599ENSMUST00000168889ENSMUSG00000035566ENSMUST00000071370
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118946 ENST00000377918 0.735±0.00 1.050±0.00 0.483±0.00 3.566±1.81 0.330±0.25 0.888±0.82 0.333±0.28 0.106±0.00 0.212±0.03 14.342±13.50 0.037±0.03 0.469±0.18 0.885±0.37 3.239±0.00
ENST00000484979 N/A N/A N/A N/A N/A 0.034±0.00 N/A 0.188±0.00 N/A N/A 0.116±0.01 N/A N/A 7.873±0.00
ENST00000612954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 0.489±0.00 2.822±0.00 N/A
ENST00000615375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A
ENSG00000214281 ENST00000398005 N/A N/A N/A N/A N/A 1.504±0.00 N/A N/A N/A N/A N/A N/A N/A 0.078±0.00
ENSG00000214335 ENST00000435601 N/A N/A N/A N/A 0.012±0.00 N/A 0.012±0.00 0.005±0.00 N/A 0.018±0.00 N/A 0.011±0.00 0.028±0.01 0.966±0.58
ENSG00000223815 ENST00000428656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A 8.072±0.00
ENSG00000232954 ENST00000454780 N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000265745 ENST00000492442 N/A 0.235±0.00 N/A 0.063±0.00 N/A N/A N/A 0.059±0.00 N/A 0.057±0.00 N/A 0.208±0.06 N/A 0.161±0.00
ENSG00000277448 ENST00000615202 0.032±0.00 0.122±0.00 N/A 0.056±0.02 0.026±0.00 0.023±0.01 0.011±0.00 0.044±0.00 0.025±0.00 0.060±0.00 0.006±0.00 0.010±0.01 0.006±0.00 0.072±0.02
ENSG00000278722 ENST00000610846 N/A N/A 2.242±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022021 ENSMUST00000022599 0.121±0.07 0.067±0.02 N/A 0.123±0.00 0.187±0.13 0.414±0.03 0.091±0.03 0.049±0.01 0.016±0.00 0.153±0.09 0.040±0.02 0.621±0.24 0.587±0.00 0.739±0.08
ENSMUST00000168889 0.032±0.01 N/A N/A 0.123±0.00 0.054±0.01 N/A N/A 0.039±0.00 0.043±0.03 0.077±0.00 0.024±0.00 2.244±1.94 1.590±1.09 2.501±1.91
ENSMUSG00000035566 ENSMUST00000071370 1.410±0.27 2.855±0.35 0.285±0.05 4.274±1.68 1.094±0.35 0.881±0.21 0.609±0.09 2.953±0.97 0.167±0.08 7.849±0.91 0.118±0.04 2.239±0.73 0.240±0.15 1.130±0.48

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