C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (metal ion transporter), member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071539 Slc39a11-001 ENSMUSG00000041654 10090 - 11:113244853-113565756 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071539
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071539 4.545±0.78 4.777±1.75 3.968±1.60 2.048±0.24 4.696±1.39 34.004±2.52 0.763±0.14 8.281±1.84 5.736±2.36 5.047±0.91 0.777±0.26 7.147±0.93 3.795±1.24 1.141±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096Z CIL_00096Z_0002 VISTA 11:112713161-113315514
CIL_00067E CIL_00067E_0002 CGP 11:112782224-113650079
CIL_00067F CIL_00067F_0002 CGP 11:113244853-113650079

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006829 IEA zinc ion transport
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030001 IEA metal ion transport
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255559 SLC39A11-001 protein_coding Homo_sapiens 0 1232
ENST00000542342 SLC39A11-002 protein_coding Homo_sapiens 0 1133
ENST00000578620 SLC39A11-004 protein_coding Homo_sapiens 1e-25 121
ENST00000579018 SLC39A11-005 protein_coding Homo_sapiens 5.00264e-43 178
ENST00000579732 SLC39A11-012 protein_coding Homo_sapiens 0 689
ENST00000579988 SLC39A11-017 processed_transcript Homo_sapiens 0 457
ENST00000580557 SLC39A11-003 protein_coding Homo_sapiens 0 590
ENST00000581005 SLC39A11-009 processed_transcript Homo_sapiens 0 303
ENST00000582179 SLC39A11-008 retained_intron Homo_sapiens 0 257
ENST00000583146 SLC39A11-007 protein_coding Homo_sapiens 0 496

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