C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072503 Rpl18-201 ENSMUSG00000059070 10090 + 7:45718071-45720835 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072503
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072503 461.788±190.52 385.805±33.85 317.003±30.75 272.599±24.82 516.231±205.86 869.802±86.29 220.016±30.32 349.805±26.05 315.310±189.37 471.248±20.14 204.931±37.40 530.902±126.53 351.787±140.48 211.374±88.17

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000084795 RPL18-006 protein_coding Homo_sapiens 0 710
ENST00000422478 RP11-709P2.1-001 processed_pseudogene Homo_sapiens 0 377
ENST00000478088 RPL18P13-001 processed_pseudogene Homo_sapiens 0 601
ENST00000486306 RP11-313M3.1-001 processed_pseudogene Homo_sapiens 0 348
ENST00000497218 RP11-286B5.1-001 processed_pseudogene Homo_sapiens 0 209
ENST00000547892 RPL18-003 retained_intron Homo_sapiens 2e-24 119
ENST00000547897 RPL18-010 non_stop_decay Homo_sapiens 0 407
ENST00000549273 RPL18-014 protein_coding Homo_sapiens 0 649
ENST00000549370 RPL18-009 nonsense_mediated_decay Homo_sapiens 0 739
ENST00000549920 RPL18-001 protein_coding Homo_sapiens 0 797
ENST00000550645 RPL18-012 protein_coding Homo_sapiens 0 399
ENST00000550671 RPL18-007 retained_intron Homo_sapiens 5.60519e-45 185
ENST00000550973 RPL18-013 protein_coding Homo_sapiens 0 654
ENST00000551749 RPL18-004 retained_intron Homo_sapiens 0 313
ENST00000552347 RPL18-005 retained_intron Homo_sapiens 0 287
ENST00000552588 RPL18-008 protein_coding Homo_sapiens 0.0000000003 69
ENST00000552705 RPL18-002 retained_intron Homo_sapiens 0 429

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