C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S-adenosylmethionine decarboxylase, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072796 Amd-ps3-201 ENSMUSG00000060096 10090 - 18:64448519-64450014 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072796
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072796 0.114±0.07 0.105±0.00 1.631±1.33 0.563±0.39 0.183±0.09 0.089±0.03 0.108±0.06 0.079±0.04 1.031±1.36 0.044±0.01 3.076±1.12 0.360±0.42 0.141±0.15 0.127±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006O8 CIL_0006O8_0002 CGP 18:64340364-64489066

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000064391 amd1-201 protein_coding Danio_rerio 0 680
ENSDART00000135919 amd1-001 protein_coding Danio_rerio 0 680
ENST00000299540 RP3-420J14.1-001 processed_pseudogene Homo_sapiens 0 597
ENST00000368876 AMD1-002 protein_coding Homo_sapiens 0 1672
ENST00000368877 AMD1-005 protein_coding Homo_sapiens 0 1550
ENST00000368882 AMD1-201 protein_coding Homo_sapiens 0 1066
ENST00000368885 AMD1-003 protein_coding Homo_sapiens 0 2335
ENST00000406493 RP3-382I10.3-001 processed_pseudogene Homo_sapiens 0 821
ENST00000412936 AMDP1-001 processed_pseudogene Homo_sapiens 0 1175
ENST00000451850 AMD1-001 nonsense_mediated_decay Homo_sapiens 0 1140
ENST00000457220 AMD1P1-001 processed_pseudogene Homo_sapiens 0 922
ENST00000465404 AMD1-004 nonsense_mediated_decay Homo_sapiens 0 669
ENST00000508874 CTD-2210P15.2-001 processed_pseudogene Homo_sapiens 0 1319
ENST00000605729 CTD-2356P16.6-001 processed_pseudogene Homo_sapiens 0 187
ENST00000610605 AMD1-202 protein_coding Homo_sapiens 0 1672
ENST00000612642 AMD1-006 retained_intron Homo_sapiens 0 1317
ENST00000619590 AMD1-007 retained_intron Homo_sapiens 0 824

Loading