C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adenosylmethionine decarboxylase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000135919 amd1-001 ENSDARG00000043856 7955 + 20:2983303-3012266 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000135919
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000135919 53.625±8.50 33.418±21.50 40.726±15.06 0.927±0.00 9.356±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001OV CIL_0001OV_0001 CGP 20:2908998-3012266

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004014 IEA adenosylmethionine decarboxylase activity
GO:0005575 ND cellular_component
GO:0006557 IEA S-adenosylmethioninamine biosynthetic process
GO:0006596 IEA polyamine biosynthetic process
GO:0006597 IEA spermine biosynthetic process
GO:0008295 IEA spermidine biosynthetic process
GO:0016829 IEA lyase activity
GO:0016831 IEA carboxy-lyase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072796 Amd-ps3-201 processed_pseudogene Mus_musculus 0 680
ENSMUST00000080898 Amd2-201 protein_coding Mus_musculus 0 680
ENSMUST00000099945 Amd1-201 protein_coding Mus_musculus 0 686
ENSMUST00000118392 Amd-ps4-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000120127 Amd-ps1-001 processed_pseudogene Mus_musculus 0 562
ENST00000368876 AMD1-002 protein_coding Homo_sapiens 0 645
ENST00000368877 AMD1-005 protein_coding Homo_sapiens 0 551
ENST00000368885 AMD1-003 protein_coding Homo_sapiens 0 719
ENST00000412936 AMDP1-001 processed_pseudogene Homo_sapiens 0 451
ENST00000508874 CTD-2210P15.2-001 processed_pseudogene Homo_sapiens 0 496
ENST00000610605 AMD1-202 protein_coding Homo_sapiens 0 645
ENST00000612642 AMD1-006 retained_intron Homo_sapiens 1e-28 134

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