C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adenosylmethionine decarboxylase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368885 AMD1-003 ENSG00000123505 9606 + 6:110874770-110895713 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368885
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368885 6.301±0.00 7.478±0.00 15.071±3.47 4.159±0.03 8.725±4.03 11.371±7.47 9.119±6.30 5.521±1.72 8.471±3.72 1.767±1.50 18.031±10.50 14.632±0.67 11.723±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001OV CIL_0001OV_0002 CGP 6:110609978-110895713

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004014 IEA:TAS adenosylmethionine decarboxylase activity
GO:0005829 TAS cytosol
GO:0006557 IEA S-adenosylmethioninamine biosynthetic process
GO:0006595 TAS polyamine metabolic process
GO:0006597 IEA spermine biosynthetic process
GO:0008295 IEA spermidine biosynthetic process
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099945 Amd1-201 protein_coding Mus_musculus 0 2815
ENSMUST00000080898 Amd2-201 protein_coding Mus_musculus 0 2798
ENSMUST00000072796 Amd-ps3-201 processed_pseudogene Mus_musculus 0 2335
ENSMUST00000118392 Amd-ps4-001 processed_pseudogene Mus_musculus 0 1611
ENSMUST00000120127 Amd-ps1-001 processed_pseudogene Mus_musculus 0 1456
ENSDART00000064391 amd1-201 protein_coding Danio_rerio 0 719
ENSDART00000135919 amd1-001 protein_coding Danio_rerio 0 719

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