C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072866 Ubap1-001 ENSMUSG00000028437 10090 + 4:41348996-41390525 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072866
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072866 17.486±1.27 16.089±1.26 2.799±0.00 1.870±0.17 13.502±4.72 13.930±5.87 4.782±1.25 15.926±1.05 9.427±2.96 10.237±3.83 5.056±0.98 13.841±6.28 6.975±3.06 17.774±8.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004U CIL_00004U_0002 CGP 4:41291300-41390525
CIL_0005IT CIL_0005IT_0002 CGP 4:41348996-41464887

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000813 ISS ESCRT I complex
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0015031 IEA protein transport
GO:0043130 ISS ubiquitin binding
GO:0043162 ISS ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297661 UBAP1-001 protein_coding Homo_sapiens 0 2728
ENST00000359544 UBAP1-002 protein_coding Homo_sapiens 0 2503
ENST00000379166 KIF24-201 protein_coding Homo_sapiens 9.80909e-45 187
ENST00000379174 KIF24-003 protein_coding Homo_sapiens 9.80909e-45 187
ENST00000379186 UBAP1-003 protein_coding Homo_sapiens 0 1670
ENST00000402558 KIF24-002 protein_coding Homo_sapiens 9.80909e-45 187

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