C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: misshapen-like kinase 1 (zebrafish)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072873 Mink1-006 ENSMUSG00000020827 10090 + 11:70562890-70614128 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072873
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072873 7.574±0.70 7.421±1.55 16.583±0.67 5.978±0.00 10.249±2.67 15.885±3.14 3.421±0.88 9.759±2.32 5.965±1.55 16.858±1.09 1.935±0.37 11.407±4.02 7.292±0.33 1.979±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RG CIL_0001RG_0002 CGP 11:70540064-70614483
CIL_0001R8 CIL_0001R8_0002 CGP 11:70562881-70619216

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005083 IEA small GTPase regulator activity
GO:0005524 IEA ATP binding
GO:0045060 IMP negative thymic T cell selection
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000051234 tnika-001 protein_coding Danio_rerio 0 662
ENSDART00000097792 tnikb-201 protein_coding Danio_rerio 0 651
ENSDART00000008374 tnikb-002 protein_coding Danio_rerio 0 634
ENSDART00000138089 tnikb-003 processed_transcript Danio_rerio 0 276
ENST00000347992 MINK1-002 protein_coding Homo_sapiens 0 2942
ENST00000355280 MINK1-001 protein_coding Homo_sapiens 0 5945
ENST00000453408 MINK1-003 protein_coding Homo_sapiens 0 2931
ENST00000571207 MINK1-006 nonsense_mediated_decay Homo_sapiens 0 2717
ENST00000572304 MINK1-012 retained_intron Homo_sapiens 5.99756e-43 178
ENST00000572330 MINK1-004 retained_intron Homo_sapiens 0 2717
ENST00000572629 MINK1-010 retained_intron Homo_sapiens 0 291
ENST00000574453 MINK1-005 nonsense_mediated_decay Homo_sapiens 0 2828
ENST00000574871 MINK1-008 retained_intron Homo_sapiens 0 815
ENST00000575511 MINK1-013 retained_intron Homo_sapiens 0 514
ENST00000576037 MINK1-014 protein_coding Homo_sapiens 0 649
ENST00000577021 MINK1-009 nonsense_mediated_decay Homo_sapiens 0 826

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