C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001RG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000129219-ENSG00000141503 CGP 9606 17:4807096-4898061
GeneTranscriptPositionBiotype
ENSG00000108556 (CHRNE)
cholinergic receptor, nicotinic, epsilon (muscle) 		ENST00000293780 (CHRNE-001) 4897774-4903074 protein_coding
ENST00000572438 (CHRNE-002) 4898057-4901811 retained_intron
ENST00000575637 (CHRNE-003) 4901009-4902630 processed_transcript
ENSG00000129219 (PLD2)
phospholipase D2 		ENST00000263088 (PLD2-001) 4807096-4823434 protein_coding
ENST00000571273 (PLD2-010) 4817944-4819213 retained_intron
ENST00000572127 (PLD2-011) 4818198-4819465 retained_intron
ENST00000572199 (PLD2-009) 4816708-4817375 retained_intron
ENST00000572940 (PLD2-015) 4807169-4823428 protein_coding
ENST00000573258 (PLD2-008) 4815903-4817137 retained_intron
ENST00000574268 (PLD2-003) 4807192-4809118 retained_intron
ENST00000574796 (PLD2-006) 4814150-4815869 retained_intron
ENST00000575246 (PLD2-002) 4807183-4818385 nonsense_mediated_decay
ENST00000575316 (PLD2-004) 4807562-4809325 protein_coding
ENST00000575813 (PLD2-005) 4810807-4815554 nonsense_mediated_decay
ENST00000575945 (PLD2-014) 4821640-4822795 retained_intron
ENST00000576329 (PLD2-007) 4815859-4816905 retained_intron
ENST00000576864 (PLD2-013) 4818593-4823434 protein_coding
ENST00000576983 (PLD2-012) 4817146-4819515 protein_coding
ENSG00000141503 (MINK1)
misshapen-like kinase 1 		ENST00000347992 (MINK1-002) 4833400-4898054 protein_coding
ENST00000355280 (MINK1-001) 4833388-4898053 protein_coding
ENST00000453408 (MINK1-003) 4833584-4897287 protein_coding
ENST00000571207 (MINK1-006) 4884469-4898061 nonsense_mediated_decay
ENST00000571526 (MINK1-011) 4893196-4893871 retained_intron
ENST00000572304 (MINK1-012) 4893578-4894216 retained_intron
ENST00000572330 (MINK1-004) 4833399-4897805 retained_intron
ENST00000572629 (MINK1-010) 4892471-4893650 retained_intron
ENST00000574453 (MINK1-005) 4833413-4898053 nonsense_mediated_decay
ENST00000574871 (MINK1-008) 4894544-4898060 retained_intron
ENST00000575511 (MINK1-013) 4894858-4895789 retained_intron
ENST00000576037 (MINK1-014) 4896205-4897145 protein_coding
ENST00000577021 (MINK1-009) 4833621-4885965 nonsense_mediated_decay
ENSG00000230201 (ATP6V0CP1)
ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 1 		ENST00000482495 (ATP6V0CP1-001) 4856757-4857374 processed_pseudogene
ENSG00000264113 (RN7SL784P)
RNA, 7SL, cytoplasmic 784, pseudogene 		ENST00000577319 (RN7SL784P-201) 4882975-4883316 misc_RNA
CIL_0001RG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020828-ENSMUSG00000020827 CGP 10090 11:70540064-70614483
GeneTranscriptPositionBiotype
ENSMUSG00000020827 (Mink1)
misshapen-like kinase 1 (zebrafish) 		ENSMUST00000072237 (Mink1-201) 70562881-70614482 protein_coding
ENSMUST00000072873 (Mink1-006) 70562890-70614128 protein_coding
ENSMUST00000079244 (Mink1-003) 70563017-70614483 protein_coding
ENSMUST00000102558 (Mink1-005) 70563070-70613712 protein_coding
ENSMUST00000102559 (Mink1-007) 70562898-70614478 protein_coding
ENSMUST00000132208 (Mink1-008) 70610051-70610979 retained_intron
ENSMUST00000133310 (Mink1-002) 70598988-70605031 processed_transcript
ENSMUST00000136663 (Mink1-004) 70601989-70614483 protein_coding
ENSMUST00000142650 (Mink1-009) 70609738-70610709 retained_intron
ENSMUST00000149845 (Mink1-001) 70604223-70607079 nonsense_mediated_decay
ENSMUST00000152857 (Mink1-010) 70607812-70608828 retained_intron
ENSMUST00000153503 (Mink1-011) 70606701-70607773 retained_intron
ENSMUST00000178764 (Mink1-013) 70604200-70607424 protein_coding
ENSMUSG00000020828 (Pld2)
phospholipase D2 		ENSMUST00000018429 (Pld2-001) 70540306-70558110 protein_coding
ENSMUST00000108556 (Pld2-002) 70540356-70546398 protein_coding
ENSMUST00000108557 (Pld2-006) 70540343-70558110 protein_coding
ENSMUST00000130678 (Pld2-003) 70555638-70557227 protein_coding
ENSMUST00000146248 (Pld2-004) 70555803-70557477 retained_intron
ENSMUST00000157075 (Pld2-005) 70540064-70541183 protein_coding
ENSMUST00000179806 (Pld2-007) 70553960-70557103 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RG_0001ENSG00000108556ENST00000293780ENSG00000129219ENST00000263088ENST00000572940ENST00000574796ENST00000575246ENST00000575316ENST00000575813ENST00000576864ENST00000576983ENSG00000141503ENST00000347992ENST00000355280ENST00000453408ENST00000572330ENST00000574453ENST00000575511ENST00000577021ENSG00000230201ENST00000482495ENSG00000264113ENST00000577319CIL_0001RG_0002ENSMUSG00000020827ENSMUST00000072237ENSMUST00000072873ENSMUST00000079244ENSMUST00000102558ENSMUST00000102559ENSMUST00000136663ENSMUSG00000020828ENSMUST00000018429ENSMUST00000108556ENSMUST00000108557ENSMUST00000179806
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108556 ENST00000293780 N/A N/A N/A N/A N/A N/A N/A N/A 3.470±0.00 N/A N/A N/A N/A N/A
ENST00000572438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000129219 ENST00000263088 2.531±0.00 3.661±0.00 N/A 0.454±0.00 3.955±3.07 0.140±0.00 0.655±0.34 1.482±0.00 N/A 5.995±0.00 N/A 7.130±4.94 5.885±2.93 1.470±0.00
ENST00000571273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572940 6.590±0.00 8.502±0.00 0.558±0.00 2.822±2.51 N/A 2.689±0.00 0.566±0.00 1.265±0.99 0.350±0.00 N/A 0.983±0.00 7.004±2.59 4.710±1.46 2.257±1.64
ENST00000573258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574796 N/A N/A N/A N/A N/A N/A 1.256±0.00 N/A 2.531±0.00 N/A N/A N/A N/A N/A
ENST00000575246 N/A N/A N/A 2.796±0.00 N/A N/A N/A N/A N/A N/A N/A 0.683±0.00 N/A N/A
ENST00000575316 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.012±0.00 N/A N/A N/A N/A
ENST00000575813 N/A N/A 1.879±0.00 N/A N/A N/A N/A 3.804±0.00 N/A N/A N/A N/A N/A N/A
ENST00000575945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576864 N/A N/A 0.788±0.00 N/A N/A 2.796±0.00 N/A N/A N/A N/A N/A 24.456±0.00 15.795±0.00 5.185±1.51
ENST00000576983 N/A N/A N/A 1.723±0.00 N/A 3.000±0.00 N/A N/A N/A N/A N/A 28.430±0.00 26.063±0.00 5.057±1.22
ENSG00000141503 ENST00000347992 2.986±0.00 N/A N/A 19.773±15.92 N/A N/A 4.899±0.00 N/A N/A N/A 1.728±0.00 20.332±0.00 N/A N/A
ENST00000355280 10.633±0.00 N/A N/A N/A 9.812±0.00 7.394±3.65 2.160±0.00 9.125±0.00 4.311±0.00 12.358±0.00 N/A 13.567±8.38 15.542±2.26 5.266±0.00
ENST00000453408 4.987±0.00 N/A 1.187±0.00 19.738±0.00 4.645±0.85 3.346±1.01 2.339±0.00 4.391±3.04 1.620±0.00 6.423±3.37 0.632±0.00 13.465±9.51 8.134±0.00 N/A
ENST00000571207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572330 N/A N/A N/A N/A N/A N/A N/A 0.899±0.00 1.107±0.00 1.623±0.00 N/A N/A N/A 3.815±0.00
ENST00000572629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.822±0.00 N/A N/A
ENST00000574871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.711±0.00 N/A N/A N/A
ENST00000576037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577021 N/A N/A N/A 13.093±0.00 11.373±0.00 22.927±0.00 2.018±0.00 4.141±0.00 N/A 15.043±0.00 2.161±0.00 11.606±0.00 N/A N/A
ENSG00000230201 ENST00000482495 0.271±0.00 0.819±0.00 N/A 0.659±0.00 0.153±0.00 N/A 0.161±0.00 0.073±0.00 N/A 0.289±0.00 0.030±0.00 0.669±0.61 0.118±0.01 0.387±0.19
ENSG00000264113 ENST00000577319 0.572±0.00 0.825±0.00 N/A 0.268±0.00 0.250±0.12 1.048±0.00 0.165±0.00 0.123±0.00 0.233±0.13 0.780±0.00 0.413±0.00 0.885±0.53 0.727±0.00 0.981±0.60
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020827 ENSMUST00000072237 2.029±0.00 6.962±1.99 N/A N/A 12.456±1.41 10.405±2.54 N/A 6.262±0.00 3.010±0.99 10.088±0.67 N/A 7.014±0.00 N/A N/A
ENSMUST00000072873 7.574±0.70 7.421±1.55 16.583±0.67 5.978±0.00 10.249±2.67 15.885±3.14 3.421±0.88 9.759±2.32 5.965±1.55 16.858±1.09 1.935±0.37 11.407±4.02 7.292±0.33 1.979±0.49
ENSMUST00000079244 N/A N/A N/A N/A N/A N/A N/A 4.565±1.37 1.846±0.47 7.700±0.00 N/A 6.453±0.00 2.437±1.31 N/A
ENSMUST00000102558 N/A N/A N/A 42.379±0.00 5.913±0.00 N/A 1.867±0.00 N/A N/A N/A 1.730±0.08 12.748±4.81 4.390±1.22 2.434±1.13
ENSMUST00000102559 4.405±0.77 4.271±0.88 7.201±1.03 32.185±23.07 2.670±0.00 N/A 4.904±0.43 5.559±0.72 1.457±0.13 9.460±0.42 3.701±1.63 6.366±1.81 3.334±0.59 3.545±1.12
ENSMUST00000132208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136663 4.504±1.27 3.588±0.05 6.635±0.57 7.797±0.00 7.436±1.47 6.631±1.19 2.074±0.32 6.223±2.04 4.531±1.27 8.273±0.00 1.815±0.85 9.183±2.17 3.893±1.62 N/A
ENSMUST00000142650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020828 ENSMUST00000018429 11.267±1.63 3.849±0.68 11.547±1.50 3.878±1.44 8.869±2.53 2.959±0.40 2.897±0.60 3.780±0.45 1.752±0.37 11.174±1.25 1.532±0.43 8.276±2.44 5.556±2.42 0.198±0.06
ENSMUST00000108556 N/A N/A N/A N/A N/A N/A N/A N/A 0.304±0.07 N/A 0.768±0.00 0.984±0.42 N/A 0.076±0.06
ENSMUST00000108557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.485±0.00 N/A 0.091±0.07
ENSMUST00000130678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000157075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179806 N/A N/A N/A 6.834±0.00 N/A N/A N/A N/A N/A N/A N/A 5.834±0.00 7.473±2.41 0.262±0.00

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