C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MAM domain containing glycosylphosphatidylinositol anchor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073556 Mdga1-201 ENSMUSG00000043557 10090 - 17:29827958-29887882 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverLungOvaryPlacentaTestisENSMUST00000073556
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000073556 0.042±0.00 0.075±0.00 0.503±0.00 4.797±0.00 0.052±0.00 0.025±0.01 0.083±0.08 0.086±0.01 0.137±0.06 0.032±0.01 0.103±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D2 CIL_0005D2_0002 CGP 17:29689378-29970087
CIL_0004LC CIL_0004LC_0003 CGP 17:29827956-30210019

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0003674 ND molecular_function
GO:0005615 IEA extracellular space
GO:0007420 IEA brain development
GO:0016020 IEA membrane
GO:0021527 IEA spinal cord association neuron differentiation
GO:0021799 IMP cerebral cortex radially oriented cell migration
GO:0046658 IEA anchored component of plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373401 MDGA1-005 retained_intron Homo_sapiens 0 813
ENST00000418178 MDGA1-012 protein_coding Homo_sapiens 0 634
ENST00000434837 MDGA1-001 protein_coding Homo_sapiens 0 4170
ENST00000478143 MDGA1-002 retained_intron Homo_sapiens 0 1339
ENST00000502298 MDGA1-010 nonsense_mediated_decay Homo_sapiens 0 374
ENST00000505425 MDGA1-003 protein_coding Homo_sapiens 0 3483

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