C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet derived growth factor, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076095 Pdgfa-001 ENSMUSG00000025856 10090 - 5:138976014-138995037 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076095
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076095 4.988±1.55 8.131±1.35 7.932±0.51 2.868±0.59 2.121±0.63 5.222±0.05 3.392±0.17 2.528±0.44 0.462±0.12 14.974±0.99 4.639±0.92 5.572±1.72 7.412±7.61 1.220±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018I CIL_00018I_0002 CGP 5:138976014-139150001

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IDA angiogenesis
GO:0001666 IEA response to hypoxia
GO:0001942 IMP hair follicle development
GO:0002053 IMP positive regulation of mesenchymal cell proliferation
GO:0005161 IBA platelet-derived growth factor receptor binding
GO:0005515 IEA protein binding
GO:0005518 IEA collagen binding
GO:0005615 IEA extracellular space
GO:0005902 IDA microvillus
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0007596 IBA blood coagulation
GO:0008284 IMP positive regulation of cell proliferation
GO:0009611 IEA response to wounding
GO:0009887 IMP organ morphogenesis
GO:0009986 IEA cell surface
GO:0010033 IEA response to organic substance
GO:0010035 IEA response to inorganic substance
GO:0010512 IEA negative regulation of phosphatidylinositol biosynthetic process
GO:0010544 IEA negative regulation of platelet activation
GO:0014068 IBA positive regulation of phosphatidylinositol 3-kinase signaling
GO:0014910 IEA regulation of smooth muscle cell migration
GO:0016020 IEA membrane
GO:0030031 IDA cell projection assembly
GO:0030036 IDA actin cytoskeleton organization
GO:0030335 IBA positive regulation of cell migration
GO:0031954 IBA positive regulation of protein autophosphorylation
GO:0032355 IEA response to estradiol
GO:0032526 IEA response to retinoic acid
GO:0035793 IEA positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway
GO:0042060 IEA wound healing
GO:0042493 IEA response to drug
GO:0042803 IEA protein homodimerization activity
GO:0043406 IBA positive regulation of MAP kinase activity
GO:0043410 IEA positive regulation of MAPK cascade
GO:0043588 IMP skin development
GO:0045740 IEA positive regulation of DNA replication
GO:0046982 IEA protein heterodimerization activity
GO:0048008 IBA platelet-derived growth factor receptor signaling pathway
GO:0048146 IEA positive regulation of fibroblast proliferation
GO:0048286 IMP lung alveolus development
GO:0048407 IEA platelet-derived growth factor binding
GO:0048839 IEA inner ear development
GO:0050730 IDA regulation of peptidyl-tyrosine phosphorylation
GO:0050919 IEA negative chemotaxis
GO:0051781 IEA positive regulation of cell division
GO:0051897 IEA positive regulation of protein kinase B signaling
GO:0060683 IMP regulation of branching involved in salivary gland morphogenesis by epithelial-mesenchymal signaling
GO:0070374 IBA positive regulation of ERK1 and ERK2 cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354513 PDGFA-002 protein_coding Homo_sapiens 0 979
ENST00000400761 PDGFA-005 protein_coding Homo_sapiens 0 669
ENST00000402802 PDGFA-001 protein_coding Homo_sapiens 0 1188
ENST00000405692 PDGFA-006 protein_coding Homo_sapiens 0 435
ENST00000426681 PDGFA-004 processed_transcript Homo_sapiens 1e-37 159
ENST00000482462 PDGFA-003 retained_intron Homo_sapiens 0 438

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