C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet-derived growth factor alpha polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405692 PDGFA-006 ENSG00000197461 9606 - 7:512357-520296 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverENST00000405692
Transcript ID Breast Liver
ENST00000405692 5.975±0.00 4.768±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018I CIL_00018I_0001 CGP 7:497258-727650

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008083 IEA growth factor activity
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110897 Pdgfa-004 protein_coding Mus_musculus 0 725
ENSMUST00000110896 Pdgfa-003 protein_coding Mus_musculus 0 435
ENSMUST00000046901 Pdgfa-002 protein_coding Mus_musculus 0 435
ENSMUST00000076095 Pdgfa-001 protein_coding Mus_musculus 0 435
ENSMUST00000144934 Pdgfa-007 processed_transcript Mus_musculus 0 239
ENSMUST00000124080 Pdgfa-006 processed_transcript Mus_musculus 0 237
ENSMUST00000132051 Pdgfa-005 processed_transcript Mus_musculus 0 209

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