C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UPF3 regulator of nonsense transcripts homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076265 Upf3b-001 ENSMUSG00000036572 10090 - X:37091678-37110322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076265
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076265 0.537±0.08 0.986±0.32 5.608±0.09 13.618±5.87 1.522±0.34 1.357±0.57 1.218±0.19 1.056±0.61 5.713±3.56 2.012±0.36 3.943±0.87 4.935±6.46 6.448±4.11 7.408±10.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000175 CIL_000175_0003 CGP X:37082520-37110322

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003729 IEA mRNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0035145 IEA exon-exon junction complex
GO:0044822 IEA poly(A) RNA binding
GO:0045727 IEA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000276201 UPF3B-001 protein_coding Homo_sapiens 0 1038
ENST00000345865 UPF3B-002 protein_coding Homo_sapiens 0 1971
ENST00000478840 UPF3B-003 processed_transcript Homo_sapiens 0 547
ENST00000619131 CTA-38K21.4-001 unprocessed_pseudogene Homo_sapiens 1e-23 111
ENST00000619445 UPF3B-201 protein_coding Homo_sapiens 0 793

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