C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP40 pre-mRNA processing factor 40 homolog A (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076313 Prpf40a-001 ENSMUSG00000061136 10090 - 2:53134704-53191225 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076313
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076313 1.579±0.43 5.087±0.04 8.412±3.75 1.338±0.21 1.110±0.20 0.940±0.15 1.072±0.41 4.162±3.53 1.651±0.26 2.474±0.38 9.630±0.72 6.310±1.37 2.289±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E5 CIL_0007E5_0002 CGP 2:52857860-53191284
CIL_0007DS CIL_0007DS_0002 CGP 2:53134704-53219220

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0007010 ISS cytoskeleton organization
GO:0008360 ISS regulation of cell shape
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0016363 IDA nuclear matrix
GO:0016477 ISS cell migration
GO:0032465 ISS regulation of cytokinesis
GO:0044822 IEA poly(A) RNA binding
GO:0070064 IDA proline-rich region binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354363 PRPF40A-015 nonsense_mediated_decay Homo_sapiens 0 1199
ENST00000410080 PRPF40A-001 protein_coding Homo_sapiens 0 4852
ENST00000448428 PRPF40A-008 protein_coding Homo_sapiens 0 337
ENST00000450303 PRPF40A-002 retained_intron Homo_sapiens 0 335
ENST00000467114 PRPF40A-009 retained_intron Homo_sapiens 0 394
ENST00000471167 PRPF40A-013 retained_intron Homo_sapiens 0 448
ENST00000471701 PRPF40A-014 retained_intron Homo_sapiens 0 294
ENST00000472760 PRPF40A-012 retained_intron Homo_sapiens 0 265
ENST00000486100 PRPF40A-003 processed_transcript Homo_sapiens 0 207
ENST00000489741 PRPF40A-006 retained_intron Homo_sapiens 0 209
ENST00000493468 PRPF40A-016 protein_coding Homo_sapiens 0 944
ENST00000545856 PRPF40A-004 protein_coding Homo_sapiens 0 1790

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