C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, N-methyl-D-aspartate 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361820 GRIN3A-001 ENSG00000198785 9606 - 9:101569353-101738580 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361820
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361820 0.065±0.00 0.283±0.00 0.035±0.00 1.490±0.02 0.143±0.08 0.094±0.07 0.153±0.10 0.053±0.00 0.083±0.00 0.033±0.02 0.019±0.01 0.091±0.05 0.041±0.02 0.890±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034Z CIL_00034Z_0001 CGP 9:101533851-101738580
CIL_0001QI CIL_0001QI_0001 CGP 9:101569353-101738580

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0004972 IDA N-methyl-D-aspartate selective glutamate receptor activity
GO:0005234 IBA:IEA extracellular-glutamate-gated ion channel activity
GO:0005262 IEA calcium channel activity
GO:0005515 IPI protein binding
GO:0006816 ISS calcium ion transport
GO:0016020 IDA:IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016358 IEA dendrite development
GO:0016594 IDA glycine binding
GO:0017146 IDA N-methyl-D-aspartate selective glutamate receptor complex
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0034220 IBA ion transmembrane transport
GO:0035235 IBA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0042165 IEA neurotransmitter binding
GO:0042802 IPI identical protein binding
GO:0043005 IDA neuron projection
GO:0043025 IDA neuronal cell body
GO:0045202 IDA synapse
GO:0045211 IBA postsynaptic membrane
GO:0045471 IDA response to ethanol
GO:0048511 IEA rhythmic process
GO:0051721 ISS protein phosphatase 2A binding
GO:0060134 IEA prepulse inhibition
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076674 Grin3a-002 protein_coding Mus_musculus 0 4447
ENSMUST00000093859 Grin3a-001 protein_coding Mus_musculus 0 3947
ENSMUST00000131797 Grin3a-003 processed_transcript Mus_musculus 0 3193
ENSMUST00000149148 Grin3b-003 protein_coding Mus_musculus 0 381
ENSMUST00000045085 Grin3b-001 protein_coding Mus_musculus 0 381
ENSMUST00000149059 Grin3a-004 processed_transcript Mus_musculus 5.04467e-44 185

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