C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger and WD repeat domain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076894 Rfwd2-201 ENSMUSG00000040782 10090 + 1:159232326-159347580 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076894
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076894 3.995±1.32 13.386±3.04 4.560±0.19 5.134±1.33 2.895±1.73 8.395±2.92 2.283±0.86 1.970±1.46 4.069±1.62 5.133±2.49 4.595±0.68 9.955±2.34 3.333±1.25 4.967±2.49

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005925 IEA focal adhesion
GO:0008270 IEA zinc ion binding
GO:0010212 IEA response to ionizing radiation
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0032436 IEA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0061630 IEA ubiquitin protein ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308769 RFWD2-010 protein_coding Homo_sapiens 0 1914
ENST00000367666 RFWD2-003 protein_coding Homo_sapiens 0 2084
ENST00000367667 RFWD2-002 nonsense_mediated_decay Homo_sapiens 0 2278
ENST00000367669 RFWD2-001 protein_coding Homo_sapiens 0 3380
ENST00000428997 RP11-308N19.5-001 processed_pseudogene Homo_sapiens 0 636
ENST00000459744 RFWD2-008 protein_coding Homo_sapiens 0 941
ENST00000461830 RFWD2-004 retained_intron Homo_sapiens 0 656
ENST00000474194 RFWD2-006 nonsense_mediated_decay Homo_sapiens 0 647
ENST00000482305 RFWD2-005 retained_intron Homo_sapiens 0 250
ENST00000491600 RFWD2-007 nonsense_mediated_decay Homo_sapiens 0 664
ENST00000498306 RFWD2-009 protein_coding Homo_sapiens 0 660
ENST00000579008 RFWD2P1-001 processed_pseudogene Homo_sapiens 0 2231

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