C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger and WD repeat domain 2, E3 ubiquitin protein ligase pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000579008 RFWD2P1-001 ENSG00000266613 9606 + 18:8412129-8414304 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastLungOvaryPlacentaTestisENST00000579008
Transcript ID Adipose Adrenal Bladder Breast Lung Ovary Placenta Testis
ENST00000579008 0.005±0.00 0.011±0.00 0.023±0.00 0.005±0.00 0.184±0.00 0.052±0.06 0.011±0.00 0.086±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000133472 Gm6206-001 processed_pseudogene Mus_musculus 0 2235
ENSMUST00000076894 Rfwd2-201 protein_coding Mus_musculus 0 2231
ENSMUST00000190342 RP23-293C19.3-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000190923 RP23-133G16.5-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000120979 Gm15861-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000160032 Gm16199-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000191422 RP24-286I24.2-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000121699 Gm15065-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000117170 Gm14894-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000118977 Gm12647-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000121483 Gm13210-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000120617 Gm13396-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000189783 RP24-208N6.3-001 unprocessed_pseudogene Mus_musculus 0 276
ENSMUST00000119446 Gm11794-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000119290 Gm13475-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000119659 Gm12433-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000121711 Gm13419-001 processed_pseudogene Mus_musculus 0 204

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