C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structure specific recognition protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077798 Ssrp1-001 ENSMUSG00000027067 10090 + 2:85037234-85047109 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077798
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077798 27.148±12.25 19.930±5.77 25.442±1.95 34.794±15.99 19.846±6.11 15.971±3.78 10.273±1.38 17.684±2.67 36.612±30.12 23.389±1.52 9.518±0.92 31.346±11.84 34.391±15.75 26.310±3.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NZ CIL_0002NZ_0002 CGP 2:84998583-85047109

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0006260 IEA DNA replication
GO:0006281 IEA DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278412 SSRP1-001 protein_coding Homo_sapiens 0 2754
ENST00000293880 SSRP1-002 retained_intron Homo_sapiens 0 987
ENST00000526696 SSRP1-004 protein_coding Homo_sapiens 0 1048
ENST00000529002 SSRP1-003 protein_coding Homo_sapiens 0 889

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