C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: src family associated phosphoprotein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078214 Skap2-201 ENSMUSG00000059182 10090 - 6:51859166-52012549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078214
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078214 7.618±0.74 5.855±2.44 9.933±1.16 2.847±0.81 5.197±2.07 7.116±0.82 2.158±0.44 8.499±1.08 8.374±5.01 12.553±2.47 1.164±0.24 6.338±3.88 12.076±1.92 10.620±3.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DE CIL_0009DE_0002 VISTA 6:51408576-52009543
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008JP CIL_0008JP_0002 VISTA 6:51557235-52158614
CIL_0008V2 CIL_0008V2_0002 VISTA 6:51578612-52179694
CIL_0003PD CIL_0003PD_0002 CGP 6:51859166-52158317

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0008285 IMP negative regulation of cell proliferation
GO:0042113 IEA B cell activation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345317 SKAP2-001 protein_coding Homo_sapiens 0 1332
ENST00000432747 SKAP2-007 protein_coding Homo_sapiens 0 479
ENST00000468712 SKAP2-002 retained_intron Homo_sapiens 0 688
ENST00000481204 SKAP2-003 processed_transcript Homo_sapiens 0 318
ENST00000487720 SKAP2-006 processed_transcript Homo_sapiens 0 298
ENST00000489977 SKAP2-009 processed_transcript Homo_sapiens 0 580
ENST00000490456 SKAP2-004 processed_transcript Homo_sapiens 0 414
ENST00000495802 SKAP2-005 processed_transcript Homo_sapiens 0 680
ENST00000497511 SKAP2-008 processed_transcript Homo_sapiens 0 405

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