C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin sulfate N-acetylgalactosaminyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078350 Csgalnact1-001 ENSMUSG00000036356 10090 - 8:68356781-68735146 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078350
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078350 0.689±0.42 0.173±0.00 0.823±0.10 0.868±0.64 0.546±0.24 0.189±0.00 0.382±0.05 0.325±0.10 0.184±0.09 1.849±0.62 0.345±0.14 0.579±0.20 2.517±1.05 0.199±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IX CIL_0003IX_0002 CGP 8:68276567-68735146
CIL_0003TM CIL_0003TM_0002 CGP 8:68356781-68829410

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001958 IMP endochondral ossification
GO:0008376 ISS acetylgalactosaminyltransferase activity
GO:0008955 ISS peptidoglycan glycosyltransferase activity
GO:0015020 ISS glucuronosyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0019276 ISS UDP-N-acetylgalactosamine metabolic process
GO:0030198 IMP extracellular matrix organization
GO:0030204 IMP chondroitin sulfate metabolic process
GO:0030206 ISS chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0046398 ISS UDP-glucuronate metabolic process
GO:0046872 IEA metal ion binding
GO:0047237 ISS glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0047238 ISS glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050653 ISS chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0051216 IMP cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332246 CSGALNACT1-001 protein_coding Homo_sapiens 0 1670
ENST00000397998 CSGALNACT1-002 nonsense_mediated_decay Homo_sapiens 0 924
ENST00000454498 CSGALNACT1-004 protein_coding Homo_sapiens 0 1670
ENST00000518542 CSGALNACT1-016 processed_transcript Homo_sapiens 0 350
ENST00000522854 CSGALNACT1-005 protein_coding Homo_sapiens 0 1666

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