C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin sulfate N-acetylgalactosaminyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000332246 CSGALNACT1-001 ENSG00000147408 9606 - 8:19404161-19682583 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonOvaryENST00000332246
Transcript ID Breast Colon Ovary
ENST00000332246 1.856±0.00 0.709±0.00 2.773±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IX CIL_0003IX_0001 CGP 8:19313617-19758029
CIL_0003TM CIL_0003TM_0001 CGP 8:19404161-19852083

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005622 IC intracellular
GO:0005975 TAS carbohydrate metabolic process
GO:0007399 NAS nervous system development
GO:0008037 NAS cell recognition
GO:0008283 NAS cell proliferation
GO:0008376 IDA:IEA acetylgalactosaminyltransferase activity
GO:0008955 IDA peptidoglycan glycosyltransferase activity
GO:0009653 NAS anatomical structure morphogenesis
GO:0015014 NAS heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0015020 IDA glucuronosyltransferase activity
GO:0019276 IDA UDP-N-acetylgalactosamine metabolic process
GO:0030166 ISS proteoglycan biosynthetic process
GO:0030173 NAS integral component of Golgi membrane
GO:0030198 NAS extracellular matrix organization
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 IDA chondroitin sulfate biosynthetic process
GO:0030210 NAS heparin biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0044281 TAS small molecule metabolic process
GO:0046398 IDA UDP-glucuronate metabolic process
GO:0046872 NAS metal ion binding
GO:0047237 IDA glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0047238 IDA glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050650 ISS chondroitin sulfate proteoglycan biosynthetic process
GO:0050651 ISS dermatan sulfate proteoglycan biosynthetic process
GO:0050653 IDA chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130214 Csgalnact1-002 protein_coding Mus_musculus 0 1670
ENSMUST00000078350 Csgalnact1-001 protein_coding Mus_musculus 0 1670

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