C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sad1 and UNC84 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078690 Sun1-004 ENSMUSG00000036817 10090 + 5:139200680-139248549 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungOvaryTestisENSMUST00000078690
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Ovary Testis
ENSMUST00000078690 4.899±0.71 5.645±0.00 8.179±0.29 3.692±0.15 5.349±1.04 4.785±1.45 1.194±0.32 6.315±0.73 9.309±0.54 7.838±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018K CIL_00018K_0002 CGP 5:139150223-139249840
CIL_00018J CIL_00018J_0002 CGP 5:139200637-139270051

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002080 IDA acrosomal membrane
GO:0005515 IPI protein binding
GO:0005521 IDA lamin binding
GO:0005634 IDA nucleus
GO:0005635 IDA nuclear envelope
GO:0005639 IDA integral component of nuclear inner membrane
GO:0005737 IDA cytoplasm
GO:0016021 IDA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389574 SUN1-002 protein_coding Homo_sapiens 0 222
ENST00000401592 SUN1-005 protein_coding Homo_sapiens 0 250
ENST00000405266 SUN1-001 protein_coding Homo_sapiens 0 257
ENST00000413171 SUN1-004 retained_intron Homo_sapiens 0 233
ENST00000425407 SUN1-201 protein_coding Homo_sapiens 0 222
ENST00000429178 SUN1-008 protein_coding Homo_sapiens 0 250
ENST00000433212 SUN1-012 protein_coding Homo_sapiens 0 263
ENST00000450881 SUN1-024 protein_coding Homo_sapiens 1.99993e-41 172
ENST00000452783 SUN1-202 protein_coding Homo_sapiens 0 217
ENST00000457861 SUN1-033 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000463848 SUN1-031 retained_intron Homo_sapiens 0 196
ENST00000464442 SUN1-028 retained_intron Homo_sapiens 0 241
ENST00000480475 SUN1-029 retained_intron Homo_sapiens 0 226
ENST00000488628 SUN1-030 retained_intron Homo_sapiens 0 220

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