C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ets variant 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079601 Etv5-001 ENSMUSG00000013089 10090 - 16:22381309-22439719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079601
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079601 7.849±3.27 10.686±2.48 6.590±1.40 7.313±1.22 6.182±0.17 10.867±3.43 4.797±0.78 8.850±0.47 1.957±0.80 56.208±5.43 3.257±0.30 4.059±1.73 4.179±4.11 5.017±2.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0002 VISTA 16:21809929-22410861
CIL_0006RI CIL_0006RI_0002 CGP 16:22244549-22439719
CIL_0006RL CIL_0006RL_0002 CGP 16:22381309-22657221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 IBA:ISS nucleus
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007274 IMP neuromuscular synaptic transmission
GO:0007626 IMP locomotory behavior
GO:0030154 IBA cell differentiation
GO:0034599 ISS cellular response to oxidative stress
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045666 IEA positive regulation of neuron differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048133 IEA male germ-line stem cell asymmetric division
GO:0050807 IMP regulation of synapse organization
GO:0060252 IEA positive regulation of glial cell proliferation
GO:0060762 IDA regulation of branching involved in mammary gland duct morphogenesis
GO:0071340 IMP skeletal muscle acetylcholine-gated channel clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306376 ETV5-001 protein_coding Homo_sapiens 0 2303
ENST00000413301 ETV5-005 protein_coding Homo_sapiens 0 636
ENST00000421809 ETV5-007 protein_coding Homo_sapiens 0 664
ENST00000422039 ETV5-006 protein_coding Homo_sapiens 0 379
ENST00000433149 ETV5-011 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000434744 ETV5-002 protein_coding Homo_sapiens 0 2294
ENST00000440773 ETV5-003 protein_coding Homo_sapiens 0 689
ENST00000447054 DGKG-008 processed_transcript Homo_sapiens 2e-40 169
ENST00000472868 ETV5-014 processed_transcript Homo_sapiens 1e-25 119
ENST00000475484 ETV5-008 retained_intron Homo_sapiens 8e-31 137
ENST00000476890 ETV5-004 processed_transcript Homo_sapiens 0 388
ENST00000480706 ETV5-012 processed_transcript Homo_sapiens 0 861
ENST00000484223 ETV5-009 processed_transcript Homo_sapiens 0 364
ENST00000489830 ETV5-010 processed_transcript Homo_sapiens 0 544
ENST00000495808 ETV5-013 retained_intron Homo_sapiens 2.00386e-43 178

Loading