C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G1 to S phase transition 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080030 Gspt1-002 ENSMUSG00000062203 10090 - 16:11220052-11254209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000080030
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000080030 2.770±0.56 52.479±20.67 9.620±2.36 7.255±2.20 5.907±3.25 1.289±0.00 2.065±0.00 9.232±5.46 5.528±1.05 32.556±13.07 42.578±17.01 28.703±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KD CIL_0001KD_0002 CGP 16:11192970-11254270

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003747 ISS translation release factor activity
GO:0003924 IEA GTPase activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0006415 IEA translational termination
GO:0006479 ISO protein methylation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340438 GSPT2-001 protein_coding Homo_sapiens 0 2087
ENST00000420576 GSPT1-003 protein_coding Homo_sapiens 0 2279
ENST00000434724 GSPT1-001 protein_coding Homo_sapiens 0 3559
ENST00000439887 GSPT1-002 protein_coding Homo_sapiens 0 3306
ENST00000562169 GSPT1-007 protein_coding Homo_sapiens 0 296
ENST00000562794 GSPT1-010 retained_intron Homo_sapiens 0 734
ENST00000563468 GSPT1-005 protein_coding Homo_sapiens 0 2900
ENST00000564790 GSPT1-009 processed_transcript Homo_sapiens 0 682
ENST00000565267 GSPT1-004 protein_coding Homo_sapiens 0 1751
ENST00000567631 GSPT1-008 retained_intron Homo_sapiens 5.04467e-44 182
ENST00000568849 GSPT1-006 protein_coding Homo_sapiens 0 760

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