C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G1 to S phase transition 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000563468 GSPT1-005 ENSG00000103342 9606 - 16:11872684-11897888 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000563468
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000563468 19.238±0.00 11.354±0.00 2.159±0.00 8.971±1.33 19.850±0.00 13.634±6.10 7.809±5.55 15.583±3.48 12.364±0.00 12.124±2.06 24.193±0.00 12.466±1.22 11.233±3.11 18.597±2.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KD CIL_0001KD_0001 CGP 16:11833850-11916082

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003747 IMP translation release factor activity
GO:0003924 TAS:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 NAS intracellular
GO:0006184 IEA GTP catabolic process
GO:0006415 IMP translational termination
GO:0006479 IDA protein methylation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080030 Gspt1-002 protein_coding Mus_musculus 0 2900
ENSMUST00000167571 Gspt1-001 protein_coding Mus_musculus 0 2881
ENSMUST00000096368 Gspt2-001 protein_coding Mus_musculus 0 1781
ENSMUST00000151866 4930594C11Rik-001 processed_pseudogene Mus_musculus 0 1594
ENSMUST00000167025 Gspt1-005 protein_coding Mus_musculus 0 992
ENSMUST00000164098 Gspt1-004 retained_intron Mus_musculus 0 765
ENSMUST00000166063 Gspt1-003 retained_intron Mus_musculus 0 601

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