C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L36
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080492 Rpl36-201 ENSMUSG00000057863 10090 + 17:56613395-56614243 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080492
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080492 421.296±99.90 482.359±68.66 947.549±87.60 415.320±267.03 603.041±302.10 932.050±122.21 298.014±137.73 620.911±40.34 833.692±528.68 415.863±112.70 371.871±27.98 729.268±255.79 500.374±298.49 495.287±227.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006L3 CIL_0006L3_0002 CGP 17:56613395-56626903

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347512 RPL36-003 protein_coding Homo_sapiens 0 405
ENST00000394580 RPL36-004 protein_coding Homo_sapiens 0 385
ENST00000407266 RP3-340B19.5-001 processed_pseudogene Homo_sapiens 0 215
ENST00000423857 CTA-85E5.7-001 processed_pseudogene Homo_sapiens 0 228
ENST00000426026 RPL36P2-001 processed_pseudogene Homo_sapiens 0 265
ENST00000442164 RP11-4M23.7-001 processed_pseudogene Homo_sapiens 0 237
ENST00000449443 RP11-95P9.1-001 processed_pseudogene Homo_sapiens 0 276
ENST00000477971 RP11-630D6.1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000488095 RP1-146I3.1-001 processed_pseudogene Homo_sapiens 0 339
ENST00000577222 RPL36-001 protein_coding Homo_sapiens 0 405
ENST00000579446 RPL36-007 protein_coding Homo_sapiens 0 281
ENST00000579649 RPL36-006 protein_coding Homo_sapiens 0 385
ENST00000582463 RPL36-005 protein_coding Homo_sapiens 6e-29 130
ENST00000590786 RPL36-008 retained_intron Homo_sapiens 9e-28 128

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