C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L36
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000347512 RPL36-003 ENSG00000130255 9606 + 19:5690196-5691876 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000347512
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000347512 7.208±0.00 29.923±0.00 33.687±0.00 117.760±86.32 9.287±0.00 37.116±0.00 26.184±0.00 14.673±0.00 64.635±0.00 132.234±116.28 111.087±0.00 104.065±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080492 Rpl36-201 protein_coding Mus_musculus 0 405
ENSMUST00000025040 Gm4604-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000085720 Rpl36-ps3-201 protein_coding Mus_musculus 0 388
ENSMUST00000183748 Gm5745-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000118269 Gm13611-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000121187 Rpl36-ps8-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000136893 Rpl36-ps2-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000091097 Gm5614-001 processed_pseudogene Mus_musculus 0 320
ENSDART00000150015 rpl36-002 protein_coding Danio_rerio 0 281
ENSDART00000015199 rpl36-001 protein_coding Danio_rerio 0 281
ENSMUST00000117574 Gm7851-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000119508 Rpl36-ps1-001 processed_pseudogene Mus_musculus 7e-23 111

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