C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407266 RP3-340B19.5-001 ENSG00000218749 9606 + 6:35607628-35607934 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLiverMuscleOvaryENST00000407266
Transcript ID Adipose Brain Heart Kidney Liver Muscle Ovary
ENST00000407266 0.479±0.00 0.253±0.00 0.351±0.00 0.353±0.05 0.650±0.00 0.133±0.00 0.882±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0001 VISTA 6:35189352-35792826
CIL_0002F0 CIL_0002F0_0001 CGP 6:35497874-35728583
CIL_0002O3 CIL_0002O3_0001 CGP 6:35573585-35749079

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080492 Rpl36-201 protein_coding Mus_musculus 0 215
ENSMUST00000118269 Gm13611-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000085720 Rpl36-ps3-201 protein_coding Mus_musculus 0 204
ENSMUST00000183748 Gm5745-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000121187 Rpl36-ps8-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000091097 Gm5614-001 processed_pseudogene Mus_musculus 5.60519e-45 183
ENSMUST00000136893 Rpl36-ps2-001 processed_pseudogene Mus_musculus 2.99878e-43 178
ENSMUST00000079818 Gm8973-201 protein_coding Mus_musculus 1e-36 156
ENSMUST00000117574 Gm7851-001 processed_pseudogene Mus_musculus 6e-35 150

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