C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449443 RP11-95P9.1-001 ENSG00000236580 9606 - 7:114297114-114297429 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartLungMuscleOvaryENST00000449443
Transcript ID Colon Heart Lung Muscle Ovary
ENST00000449443 1.104±0.00 0.138±0.00 0.096±0.00 0.079±0.00 0.244±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090T CIL_00090T_0001 VISTA 7:113853490-114454507
CIL_000412 CIL_000412_0001 CGP 7:113876777-114693772
CIL_000411 CIL_000411_0001 CGP 7:114086327-115019916
CIL_00095R CIL_00095R_0001 VISTA 7:114112045-114713348
CIL_0007XX CIL_0007XX_0001 VISTA 7:114115364-114716693
CIL_00092C CIL_00092C_0001 VISTA 7:114116792-114718592
CIL_00092B CIL_00092B_0001 VISTA 7:114122560-114723864
CIL_00082W CIL_00082W_0001 VISTA 7:114130724-114733211
CIL_0007K6 CIL_0007K6_0001 UCNEbase 7:114130894-114986758
CIL_0008NX CIL_0008NX_0001 VISTA 7:114202077-114803472
CIL_00082X CIL_00082X_0001 VISTA 7:114268897-114870255

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183748 Gm5745-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000080492 Rpl36-201 protein_coding Mus_musculus 0 276
ENSMUST00000085720 Rpl36-ps3-201 protein_coding Mus_musculus 0 276
ENSMUST00000121187 Rpl36-ps8-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000118269 Gm13611-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000079818 Gm8973-201 protein_coding Mus_musculus 0 252
ENSMUST00000091097 Gm5614-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000136893 Rpl36-ps2-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000117574 Gm7851-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000118697 Gm11997-001 processed_pseudogene Mus_musculus 1e-36 156

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