C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ryanodine receptor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080673 Ryr3-001 ENSMUSG00000057378 10090 - 2:112631380-113217051 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLungMuscleOvaryENSMUST00000080673
Transcript ID Brain Colon Heart Lung Muscle Ovary
ENSMUST00000080673 0.636±0.00 0.417±0.00 0.162±0.04 0.105±0.00 0.123±0.02 0.427±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HM CIL_0003HM_0002 CGP 2:112479171-112634573
CIL_000222 CIL_000222_0002 CGP 2:112492964-113217096

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005219 ISS ryanodine-sensitive calcium-release channel activity
GO:0005509 IEA calcium ion binding
GO:0005516 IEA calmodulin binding
GO:0006874 IMP cellular calcium ion homeostasis
GO:0006941 IMP striated muscle contraction
GO:0016021 ISS integral component of membrane
GO:0030314 IDA junctional membrane complex
GO:0033017 IDA sarcoplasmic reticulum membrane
GO:0051289 ISS protein homotetramerization
GO:0070588 ISS calcium ion transmembrane transport
GO:0071277 ISS cellular response to calcium ion
GO:0071286 ISS cellular response to magnesium ion
GO:0071313 ISS cellular response to caffeine
GO:0071318 ISS cellular response to ATP

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000014749 ryr1a-201 protein_coding Danio_rerio 0 723
ENSDART00000137089 ryr1a-001 protein_coding Danio_rerio 0 723
ENSDART00000122570 protein_coding Danio_rerio 0 599
ENST00000389232 RYR3-001 protein_coding Homo_sapiens 0 18810
ENST00000415757 RYR3-002 protein_coding Homo_sapiens 0 18880
ENST00000558060 RYR3-004 retained_intron Homo_sapiens 0 470
ENST00000559333 RYR3-007 processed_transcript Homo_sapiens 0 501
ENST00000559917 RYR3-006 processed_transcript Homo_sapiens 0 833
ENST00000560791 RYR3-005 retained_intron Homo_sapiens 0 579
ENST00000622037 RYR3-201 protein_coding Homo_sapiens 0 18760

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