C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ryanodine receptor 1a (skeletal)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000014749 ryr1a-201 ENSDARG00000011422 7955 + 10:34435169-34568619 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000014749
Transcript ID Brain Heart Liver Muscle
ENSDART00000014749 0.690±0.13 0.405±0.28 0.039±0.00 1.053±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005219 IEA ryanodine-sensitive calcium-release channel activity
GO:0005262 IEA calcium channel activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0055085 IEA transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080673 Ryr3-001 protein_coding Mus_musculus 0 723
ENSMUST00000091818 Ryr3-201 protein_coding Mus_musculus 0 723
ENSMUST00000134358 Ryr3-002 processed_transcript Mus_musculus 0 723
ENSMUST00000137131 Ryr3-005 processed_transcript Mus_musculus 0 723
ENSMUST00000142537 Ryr3-007 processed_transcript Mus_musculus 0 272
ENST00000355481 RYR1-001 protein_coding Homo_sapiens 0 922
ENST00000359596 RYR1-010 protein_coding Homo_sapiens 0 922
ENST00000360985 RYR1-201 protein_coding Homo_sapiens 0 922
ENST00000389232 RYR3-001 protein_coding Homo_sapiens 0 244
ENST00000415757 RYR3-002 protein_coding Homo_sapiens 0 244
ENST00000622037 RYR3-201 protein_coding Homo_sapiens 0 244

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