C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S-adenosylmethionine decarboxylase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080898 Amd2-201 ENSMUSG00000063953 10090 - 10:35708691-35711891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080898 0.142±0.08 0.120±0.04 4.122±4.03 2.971±1.22 0.092±0.02 0.256±0.08 0.230±0.09 0.067±0.04 1.652±3.47 0.094±0.05 1.461±1.11 0.112±0.08 0.049±0.01 0.183±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004014 IDA adenosylmethionine decarboxylase activity
GO:0006557 IEA S-adenosylmethioninamine biosynthetic process
GO:0006597 IEA spermine biosynthetic process
GO:0008295 IEA spermidine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000064391 amd1-201 protein_coding Danio_rerio 0 680
ENSDART00000135919 amd1-001 protein_coding Danio_rerio 0 680
ENST00000299540 RP3-420J14.1-001 processed_pseudogene Homo_sapiens 0 586
ENST00000368876 AMD1-002 protein_coding Homo_sapiens 0 2174
ENST00000368877 AMD1-005 protein_coding Homo_sapiens 0 1808
ENST00000368882 AMD1-201 protein_coding Homo_sapiens 0 1568
ENST00000368885 AMD1-003 protein_coding Homo_sapiens 0 2798
ENST00000406493 RP3-382I10.3-001 processed_pseudogene Homo_sapiens 0 809
ENST00000412936 AMDP1-001 processed_pseudogene Homo_sapiens 0 1164
ENST00000451850 AMD1-001 nonsense_mediated_decay Homo_sapiens 0 1640
ENST00000457220 AMD1P1-001 processed_pseudogene Homo_sapiens 0 911
ENST00000465404 AMD1-004 nonsense_mediated_decay Homo_sapiens 0 1011
ENST00000508874 CTD-2210P15.2-001 processed_pseudogene Homo_sapiens 0 1308
ENST00000605729 CTD-2356P16.6-001 processed_pseudogene Homo_sapiens 0 187
ENST00000610605 AMD1-202 protein_coding Homo_sapiens 0 2174
ENST00000612642 AMD1-006 retained_intron Homo_sapiens 0 1820
ENST00000619590 AMD1-007 retained_intron Homo_sapiens 0 1332

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