C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter, glycine), member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372310 SLC6A9-003 ENSG00000196517 9606 - 1:43996483-44031386 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372310
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372310 2.036±0.00 6.160±0.00 0.443±0.00 4.617±3.98 2.279±0.00 5.061±0.00 0.228±0.14 1.334±1.17 0.089±0.00 8.815±8.44 0.348±0.00 8.676±5.69 1.462±0.25 2.616±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B8 CIL_0009B8_0001 VISTA 1:43734711-44337665
CIL_0008SF CIL_0008SF_0001 VISTA 1:43949748-44550457

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0005283 IEA sodium:amino acid symporter activity
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006810 TAS transport
GO:0006836 IEA neurotransmitter transport
GO:0015375 TAS glycine:sodium symporter activity
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030269 Slc6a9-001 protein_coding Mus_musculus 0 2796
ENSMUST00000063857 Slc6a9-003 protein_coding Mus_musculus 0 2660
ENSMUST00000163288 Slc6a9-010 protein_coding Mus_musculus 0 2283
ENSMUST00000169885 Slc6a9-009 protein_coding Mus_musculus 0 2047
ENSMUST00000169990 Slc6a9-013 protein_coding Mus_musculus 0 1308
ENSMUST00000132043 Slc6a9-006 protein_coding Mus_musculus 0 1308
ENSMUST00000149168 Slc6a9-002 nonsense_mediated_decay Mus_musculus 0 1303
ENSMUST00000136476 Slc6a9-008 processed_transcript Mus_musculus 0 651
ENSMUST00000123994 Slc6a9-011 protein_coding Mus_musculus 0 510
ENSMUST00000164853 Ccdc24-006 protein_coding Mus_musculus 0 484
ENSMUST00000154439 Ccdc24-002 retained_intron Mus_musculus 0 420
ENSMUST00000135769 Slc6a9-007 processed_transcript Mus_musculus 0 268
ENSMUST00000163974 Ccdc24-009 processed_transcript Mus_musculus 0 195
ENSMUST00000084325 B4galt2-004 nonsense_mediated_decay Mus_musculus 0.00000000004 75
ENSMUST00000106422 Ccdc24-001 protein_coding Mus_musculus 0.00000000004 75

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