C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic FMR1 interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085255 Cyfip1-002 ENSMUSG00000030447 10090 + 7:55842206-55930498 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085255
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085255 5.152±0.67 12.161±5.34 3.652±0.00 9.011±1.64 7.192±0.51 13.532±3.24 2.833±0.12 6.004±1.07 2.573±1.94 5.157±1.07 0.828±0.06 11.024±3.31 5.535±2.80 1.584±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006L9 CIL_0006L9_0002 CGP 7:55794148-55930700
CIL_0003A6 CIL_0003A6_0002 CGP 7:55841745-55962476

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 ISS ruffle
GO:0005515 IPI protein binding
GO:0005522 TAS profilin binding
GO:0005845 IDA mRNA cap binding complex
GO:0008360 IEA regulation of cell shape
GO:0030027 IDA lamellipodium
GO:0030032 IDA lamellipodium assembly
GO:0030054 IEA cell junction
GO:0031529 ISS ruffle organization
GO:0043005 IDA neuron projection
GO:0045202 IEA synapse
GO:0048365 ISS Rac GTPase binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048675 ISS axon extension
GO:0051015 ISS actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000149396 cyfip2-001 protein_coding Danio_rerio 0 1192
ENSDART00000020014 cyfip2-201 protein_coding Danio_rerio 0 1182
ENSDART00000123607 cyfip2-202 protein_coding Danio_rerio 0 1182
ENSDART00000065127 cyfip1-001 protein_coding Danio_rerio 0 1142
ENSDART00000104233 cyfip1-201 protein_coding Danio_rerio 0 1140
ENSDART00000147898 cyfip1-003 processed_transcript Danio_rerio 0 279
ENST00000435847 CYFIP2-006 protein_coding Homo_sapiens 0 1109
ENST00000519663 CYFIP2-011 retained_intron Homo_sapiens 0 407
ENST00000521420 CYFIP2-001 protein_coding Homo_sapiens 0 1109
ENST00000522463 CYFIP2-007 protein_coding Homo_sapiens 0 1109
ENST00000522892 CYFIP2-021 retained_intron Homo_sapiens 0 195
ENST00000523383 CYFIP2-022 retained_intron Homo_sapiens 0 407
ENST00000541131 CYFIP2-201 protein_coding Homo_sapiens 0 1109
ENST00000557890 CYFIP1-014 retained_intron Homo_sapiens 0 281
ENST00000561263 CYFIP1-015 protein_coding Homo_sapiens 0 682
ENST00000610365 CYFIP1-003 protein_coding Homo_sapiens 0 2573
ENST00000611832 CYFIP1-017 protein_coding Homo_sapiens 0 616
ENST00000612288 CYFIP1-020 protein_coding Homo_sapiens 0 739
ENST00000613006 CYFIP1-016 protein_coding Homo_sapiens 0 641
ENST00000616178 CYFIP2-003 protein_coding Homo_sapiens 0 1109
ENST00000617556 CYFIP1-004 protein_coding Homo_sapiens 0 2573
ENST00000617928 CYFIP1-001 protein_coding Homo_sapiens 0 2573
ENST00000618329 CYFIP2-002 protein_coding Homo_sapiens 0 1109
ENST00000619037 CYFIP1-018 nonsense_mediated_decay Homo_sapiens 9.80909e-45 183
ENST00000619290 CYFIP1-022 retained_intron Homo_sapiens 0 894
ENST00000619348 CYFIP1-005 retained_intron Homo_sapiens 0 1827
ENST00000620254 CYFIP2-008 protein_coding Homo_sapiens 0 1109
ENST00000620969 CYFIP2-202 protein_coding Homo_sapiens 0 785
ENST00000621036 CYFIP1-019 retained_intron Homo_sapiens 0 385
ENST00000621105 CYFIP1-023 retained_intron Homo_sapiens 0 494

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