C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic FMR1 interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620254 CYFIP2-008 ENSG00000055163 9606 + 5:157266081-157393224 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000620254
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000620254 1.100±0.00 20.190±4.31 0.685±0.00 1.729±0.00 2.671±1.50 12.898±8.69 4.218±0.00 10.133±0.00 2.270±1.62 4.811±0.00 2.363±1.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094M CIL_00094M_0001 VISTA 5:157087063-157688799
CIL_00023S CIL_00023S_0001 CGP 5:157266079-157395598

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006915 IDA apoptotic process
GO:0016020 IDA membrane
GO:0016337 IDA single organismal cell-cell adhesion
GO:0030054 IEA cell junction
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0043005 IEA neuron projection
GO:0045087 TAS innate immune response
GO:0045202 IDA synapse
GO:0045862 IDA positive regulation of proteolysis
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070062 IDA extracellular vesicular exosome
GO:0097202 IDA activation of cysteine-type endopeptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093166 Cyfip2-001 protein_coding Mus_musculus 0 5240
ENSMUST00000093165 Cyfip2-201 protein_coding Mus_musculus 0 5155
ENSMUST00000165599 Cyfip2-202 protein_coding Mus_musculus 0 5155
ENSDART00000149396 cyfip2-001 protein_coding Danio_rerio 0 3509
ENSDART00000020014 cyfip2-201 protein_coding Danio_rerio 0 3496
ENSDART00000123607 cyfip2-202 protein_coding Danio_rerio 0 3496
ENSMUST00000142017 Cyfip2-002 protein_coding Mus_musculus 0 2868
ENSMUST00000163845 Cyfip1-006 protein_coding Mus_musculus 0 2453
ENSMUST00000032629 Cyfip1-001 protein_coding Mus_musculus 0 2453
ENSDART00000065127 cyfip1-001 protein_coding Danio_rerio 0 2272
ENSDART00000104233 cyfip1-201 protein_coding Danio_rerio 0 2222
ENSMUST00000173497 Cyfip1-005 retained_intron Mus_musculus 0 2113
ENSMUST00000085255 Cyfip1-002 protein_coding Mus_musculus 0 1109
ENSMUST00000173267 Cyfip1-004 retained_intron Mus_musculus 0 1105
ENSDART00000147898 cyfip1-003 processed_transcript Danio_rerio 0 270
ENSMUST00000129474 Cyfip2-003 protein_coding Mus_musculus 0.000000000000007 88

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