C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glioblastoma amplified sequence
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000322090 GBAS-001 ENSG00000146729 9606 + 7:55964581-56000181 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322090
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322090 15.866±0.00 7.103±0.00 2.660±0.00 23.825±13.27 16.954±10.03 16.097±6.62 62.967±47.01 18.092±17.35 7.634±3.79 13.039±6.05 55.939±24.61 15.697±3.10 10.180±1.19 15.434±8.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000646 CIL_000646_0001 CGP 7:55793544-55955239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005739 ISS mitochondrion
GO:0005887 TAS integral component of plasma membrane
GO:0006119 IMP oxidative phosphorylation
GO:0006754 IMP ATP biosynthetic process
GO:0016020 TAS membrane
GO:2000984 IMP negative regulation of ATP citrate synthase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186265 Gbas-201 protein_coding Mus_musculus 0 880
ENSMUST00000124342 Gbas-002 nonsense_mediated_decay Mus_musculus 0 880
ENSMUST00000086046 Gbas-001 protein_coding Mus_musculus 0 880

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