C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: microtubule crosslinking factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086693 Mtcl1-001 ENSMUSG00000052105 10090 - 17:66336982-66449750 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086693
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086693 0.400±0.15 1.014±0.35 0.871±0.29 1.810±0.00 0.478±0.27 0.638±0.08 0.291±0.14 0.466±0.13 0.014±0.00 8.134±4.12 0.466±0.08 3.615±2.14 1.091±1.24 1.454±0.58

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 IDA spindle pole
GO:0001578 IDA microtubule bundle formation
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005856 IDA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0008017 IDA microtubule binding
GO:0010506 IEA regulation of autophagy
GO:0016327 IDA apicolateral plasma membrane
GO:0016328 IDA lateral plasma membrane
GO:0030496 IDA midbody
GO:0042803 IDA protein homodimerization activity
GO:0044822 IEA poly(A) RNA binding
GO:0045197 IDA establishment or maintenance of epithelial cell apical/basal polarity
GO:0090314 IDA positive regulation of protein targeting to membrane
GO:0097427 IDA microtubule bundle
GO:2000576 IDA positive regulation of microtubule motor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000092402 soga3a-201 protein_coding Danio_rerio 0.0005 53
ENSDART00000156765 soga3a-001 nonsense_mediated_decay Danio_rerio 0.0005 53
ENSDART00000156685 soga3a-001 protein_coding Danio_rerio 0.0005 53
ENST00000306329 MTCL1-015 protein_coding Homo_sapiens 0 4848
ENST00000359865 MTCL1-001 protein_coding Homo_sapiens 0 2268
ENST00000400050 MTCL1-201 protein_coding Homo_sapiens 0 2268
ENST00000446207 MTCL1P1-001 processed_pseudogene Homo_sapiens 0 604
ENST00000517554 MTCL1-005 retained_intron Homo_sapiens 0 381
ENST00000517570 MTCL1-003 protein_coding Homo_sapiens 0 4037
ENST00000518226 MTCL1-012 processed_transcript Homo_sapiens 0 248
ENST00000518815 MTCL1-006 protein_coding Homo_sapiens 0 2010
ENST00000519823 MTCL1-017 processed_transcript Homo_sapiens 0 302
ENST00000520495 MTCL1-004 nonsense_mediated_decay Homo_sapiens 0 1164
ENST00000520926 MTCL1-013 retained_intron Homo_sapiens 0 477
ENST00000521018 MTCL1-010 processed_transcript Homo_sapiens 0 366
ENST00000522146 MTCL1-008 retained_intron Homo_sapiens 0 468
ENST00000522592 MTCL1-011 processed_transcript Homo_sapiens 0 278
ENST00000523811 MTCL1-009 processed_transcript Homo_sapiens 0 250
ENST00000581670 MTCL1-016 processed_transcript Homo_sapiens 0 623

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