C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: microtubule crosslinking factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306329 MTCL1-015 ENSG00000168502 9606 + 18:8705661-8828946 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306329
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306329 0.309±0.00 0.090±0.00 0.615±0.00 0.273±0.19 0.110±0.00 0.410±0.00 0.871±0.00 0.264±0.00 0.121±0.00 2.345±1.75 0.529±0.27 2.877±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00025R CIL_00025R_0002 CGP 18:8609445-8832778

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 IDA spindle pole
GO:0001578 ISS microtubule bundle formation
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005856 IDA cytoskeleton
GO:0008017 IDA microtubule binding
GO:0010506 IEA regulation of autophagy
GO:0016327 ISS apicolateral plasma membrane
GO:0016328 ISS lateral plasma membrane
GO:0030496 IDA midbody
GO:0042803 ISS protein homodimerization activity
GO:0044822 IDA poly(A) RNA binding
GO:0045197 ISS establishment or maintenance of epithelial cell apical/basal polarity
GO:0090314 ISS positive regulation of protein targeting to membrane
GO:0097427 ISS microtubule bundle
GO:2000576 ISS positive regulation of microtubule motor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097291 Mtcl1-002 protein_coding Mus_musculus 0 4915
ENSMUST00000086693 Mtcl1-001 protein_coding Mus_musculus 0 4848
ENSMUST00000145347 Mtcl1-003 protein_coding Mus_musculus 0 3578
ENSMUST00000177034 Mtcl1-011 protein_coding Mus_musculus 0 2350
ENSMUST00000134139 Mtcl1-004 retained_intron Mus_musculus 0 784
ENSMUST00000144492 Mtcl1-006 processed_transcript Mus_musculus 0 702
ENSMUST00000142154 Mtcl1-007 retained_intron Mus_musculus 0 664
ENSMUST00000127259 Mtcl1-005 retained_intron Mus_musculus 0 534
ENSMUST00000143420 Mtcl1-009 processed_transcript Mus_musculus 0 436
ENSMUST00000129525 Mtcl1-010 retained_intron Mus_musculus 0 359
ENSMUST00000069098 Soga1-001 protein_coding Mus_musculus 0 206

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