C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hairy and enhancer of split 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086851 Hes6-001 ENSMUSG00000067071 10090 - 1:91411483-91413222 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086851
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086851 8.930±1.58 73.972±15.21 7.685±0.63 30.914±20.62 9.032±3.30 41.944±3.09 5.561±3.53 23.790±0.43 27.136±16.06 13.022±2.84 3.882±0.80 16.701±4.14 7.672±2.41 1.467±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0006X3 CIL_0006X3_0002 CGP 1:91373861-91414038
CIL_0004KS CIL_0004KS_0003 CGP 1:91411483-91459324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003712 IDA transcription cofactor activity
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0007399 IMP nervous system development
GO:0008134 NAS transcription factor binding
GO:0030154 IDA cell differentiation
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000019035 her8a-201 protein_coding Danio_rerio 0.000002 58
ENSDART00000123395 her8a-001 protein_coding Danio_rerio 0.000002 58
ENST00000272937 HES6-001 protein_coding Homo_sapiens 0 658
ENST00000409002 HES6-002 protein_coding Homo_sapiens 0 619
ENST00000409160 HES6-003 protein_coding Homo_sapiens 0 379
ENST00000409182 HES6-006 protein_coding Homo_sapiens 0 477
ENST00000409356 HES6-007 protein_coding Homo_sapiens 0 348
ENST00000409574 HES6-005 protein_coding Homo_sapiens 0 361
ENST00000436051 HES6-004 protein_coding Homo_sapiens 0 326

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