C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hes family bHLH transcription factor 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272937 HES6-001 ENSG00000144485 9606 - 2:238238267-238240124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLungOvaryPlacentaENST00000272937
Transcript ID Breast Colon Lung Ovary Placenta
ENST00000272937 1.119±0.00 0.673±0.00 0.340±0.00 5.506±0.00 1.237±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006X3 CIL_0006X3_0001 CGP 2:238170401-238240662
CIL_0004KS CIL_0004KS_0002 CGP 2:238238267-238290102

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003712 ISS transcription cofactor activity
GO:0005634 IEA nucleus
GO:0005667 ISS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS:IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0008134 NAS transcription factor binding
GO:0030154 IEA cell differentiation
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086851 Hes6-001 protein_coding Mus_musculus 0 658
ENSMUST00000132188 Hes6-004 retained_intron Mus_musculus 0 599
ENSMUST00000150520 Hes6-002 processed_transcript Mus_musculus 0 394
ENSMUST00000126136 Hes6-005 retained_intron Mus_musculus 0 379
ENSMUST00000155752 Hes6-003 retained_intron Mus_musculus 0 357

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