C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein D-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086900 Hnrnpdl-003 ENSMUSG00000029328 10090 - 5:100034727-100039664 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086900
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086900 9.943±5.56 9.621±1.18 32.859±9.09 7.919±1.49 9.351±4.71 3.110±0.60 17.665±8.56 6.271±0.54 8.512±0.63 14.789±3.47 61.564±72.03 12.163±15.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JO CIL_0007JO_0002 UCNEbase 5:99961884-100035864
CIL_00052Q CIL_00052Q_0003 CGP 5:100033577-100068762

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 ISA DNA binding
GO:0003723 ISA RNA binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016071 ISA mRNA metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295470 HNRNPDL-001 protein_coding Homo_sapiens 0 1892
ENST00000349655 HNRNPDL-005 nonsense_mediated_decay Homo_sapiens 0 2010
ENST00000427435 RP11-2P2.1-001 processed_pseudogene Homo_sapiens 7e-24 111
ENST00000502762 HNRNPDL-002 nonsense_mediated_decay Homo_sapiens 0 2390
ENST00000507721 HNRNPDL-004 protein_coding Homo_sapiens 0 1430
ENST00000514511 HNRNPDL-003 nonsense_mediated_decay Homo_sapiens 0 699
ENST00000602300 HNRNPDL-006 protein_coding Homo_sapiens 0 1506
ENST00000614627 HNRNPDL-201 protein_coding Homo_sapiens 0 1504
ENST00000621267 HNRNPDL-202 protein_coding Homo_sapiens 0 1892

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