C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine-rich repeat LGI family, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087252 Lgi1-001 ENSMUSG00000067242 10090 + 19:38264782-38308939 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087252
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087252 0.356±0.06 0.177±0.08 0.470±0.02 5.235±3.00 0.074±0.04 0.102±0.04 1.336±0.39 0.056±0.02 0.025±0.03 0.132±0.07 1.009±0.55 0.204±0.11 0.014±0.01 0.067±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000104 CIL_000104_0002 CGP 19:38188481-38308939
CIL_00067L CIL_00067L_0002 CGP 19:38264782-38405607

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005515 IPI protein binding
GO:0005615 ISS extracellular space
GO:0007411 IEA axon guidance
GO:0030054 IEA cell junction
GO:0030307 IEA positive regulation of cell growth
GO:0031175 IEA neuron projection development
GO:0045202 IEA synapse
GO:0050806 ISS positive regulation of synaptic transmission
GO:0051260 IEA protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371413 LGI1-002 protein_coding Homo_sapiens 0 1376
ENST00000371418 LGI1-001 protein_coding Homo_sapiens 0 2994
ENST00000478763 LGI1-003 processed_transcript Homo_sapiens 0 612
ENST00000485458 LGI1-005 processed_transcript Homo_sapiens 0 224

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